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Structural Alignment

A Graph-Theoretic Approach

Language EnglishEnglish
Book Paperback
Book Structural Alignment Layal Kazma
Libristo code: 06835132
Publishers VDM Verlag, March 2011
Structural alignment is the process of finding similarities between a pair of proteins based on thei... Full description
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Structural alignment is the process of finding similarities between a pair of proteins based on their three-dimensional shape. Accurate detection of such similarities could reveal evolutionary relationships and predict the functions of different proteins. Despite the existing algorithms, the protein structure alignment problem is not completely solved. In this work a graph-theoretic approach is considered, which consists of representing tertiary protein structures as labeled graphs, and interpreting the structural alignment problem as a particular case of the Maximum Common Subgraph (MCS) problem. Our algorithm was then implemented under parallel platforms using a combination of threads and message passing techniques. Experiments were performed on a set of proteins selected randomly from the Protein Data Bank. The experiments proved the time- efficiency and accuracy of our method when compared to several other algorithms.

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About the book

Full name Structural Alignment
Author Layal Kazma
Language English
Binding Book - Paperback
Date of issue 2011
Number of pages 80
EAN 9783639279368
ISBN 3639279360
Libristo code 06835132
Publishers VDM Verlag
Weight 127
Dimensions 152 x 229 x 5

Categories

Computing & Information Technology > Information technology: general issues
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