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FPGA Implementation of the FM-Index String Matching algorithm

Language EnglishEnglish
Book Paperback
Book FPGA Implementation of the FM-Index String Matching algorithm Edward Bryann Fernandez
Libristo code: 06936667
Publishers Scholars' Press, November 2013
This book discusses the research processes of developing a hardware implementation of a string match... Full description
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This book discusses the research processes of developing a hardware implementation of a string matching algorithm. The first phase of the research is qualifying the appropriate algorithm for the application of DNA sequence matching. The second phase is re-inventing the algorithm to make it suitable for a hardware implementation. The third phase is implementing the chosen algorithm using FPGAs. The last phase is measuring performance using real data sets for comparison to other known tools. Our implementation shows a real time speedup up of up to 70x against BOWTIE, a known tool used in sequence matching.

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About the book

Full name FPGA Implementation of the FM-Index String Matching algorithm
Author Edward Bryann Fernandez
Language English
Binding Book - Paperback
Date of issue 2013
Number of pages 140
EAN 9783639702781
ISBN 3639702786
Libristo code 06936667
Publishers Scholars' Press
Weight 213
Dimensions 152 x 229 x 8

Categories

Mathematics & Science > Biology, life sciences > Life sciences: general issues > Genetics (non-medical)
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